Whole Genome Sequencing and Assembly - SRA

SRX157433: Whole Genome Sequencing and Assembly
1 PACBIO_SMRT (PacBio RS) run: 81,741 spots, 220.9M bases, 831.5Mb downloads

UUID: d8cfebfd-6d24-43b6-a544-07b411ae47d5

Design: Fragment library

Submitted by: Broad Institute (BI)

Study: Reference genome for the Human Microbiome Project

PRJNA32461 • SRP001666 • All experiments • All runs

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Reference genome for the Human Microbiome Project. Another assembly of this organism was generated independently from the HMP reference genome, using PacBio and Illumina sequence reads.

Sample: Generic sample from Coprobacillus sp. D6

SAMN00102935 • SRS002764 • All experiments • All runs

Organism: Coprobacillus cateniformis

Library:

Name: PACBIO-51

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Construction protocol: Pacific Biosciences

Spot descriptor:

1 forward

Experiment attributes: (show all 13 attributes...) (hide...)

gssr_id: 22682.11

lsid: BROAD:SEQUENCING_SAMPLE:22682.11

material_type: Genomic DNA

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit 2.0 (24 Rxn)

pacbio_rs_binding_kit_barcodes: 004012001672551091513, 120126001672551071712

pacbio_rs_template_prep_kit_barcodes: 004012001540726091513, 110170001540835072512

pacbio_rs_template_prep_kits: DNA Template Prep Kit 2.0 (250bp - 3Kb), DNA Templ (show full text...)(hide...)

DNA Template Prep Kit 2.0 (250bp - 3Kb), DNA Template Prep Kit 2.0 (3Kb - 10Kb)

project: D2397

sequencing_protocol: Standard Sequencing

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 10000

used_binding_kit_control: true

work_request: 29265

Pipeline: show...hide...

Name	Step	Program	Version
2012-03-09 17:35:31.0	Instrument Control Version	1.3.0.50.104380
base caller	2012-03-09 15:07:47.0	Primary Analysis	NRT@172.31.128.10:8082, SwVer=13050.104380, HwVer=1.0

Runs: 1 run, 81,741 spots, 220.9M bases, 831.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR517973	81,741	220.9M	831.5Mb	2012-07-03

ID:: 198979

SRA

Sequence Read Archive

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